Source code for t1t2ne.scripts.hydrodynamics_utils

#!/usr/bin/env python3


[docs] def water_viscosity(T): """ Returns the viscosity of water in centipoise at temperature T (Kelvin) Equation from CRC Handbook of Chemistry and Physics, 96th Edition, 2015 Parameters: ----------- T : float Temperature in Kelvin Returns: -------- eta_water : float Viscosity of water in centipoise """ eta_water = 1.7753 - 0.0565 * (T - 273) + 1.0751e-3 * (T - 273)**2 - 9.222e-6 * (T - 273)**3 return eta_water
[docs] def recompute_tau(tau, T_new, T_old=298.15): """ Recompute the correlation time tau at a new temperature T_new, given the old temperature T_old and the old correlation time tau. Assumes that the correlation time is proportional to the viscosity of water at the given temperature, and inversely proportional to temperature, according to the Stokes-Einstein relation. Parameters: ----------- tau : float Correlation time at the old temperature T_old, in seconds T_new : float New temperature in Kelvin T_old : float, optional Old temperature in Kelvin (default is 298.15 K) Returns: -------- tau_new : float Recomputed correlation time at the new temperature T_new, in seconds """ eta_old = water_viscosity(T_old) eta_new = water_viscosity(T_new) tau_new = tau * (eta_new / eta_old) * (T_old / T_new) return tau_new